Package: rtorf 4.3.2

Sergio Ibarra-Espinosa

rtorf: Observations, Footprints and Receptors ('rtorf') and HYSPLIT Configuration Tools

Ingest, process, and visualize atmospheric observation data, specifically tailored for the NOAA Global Monitoring Laboratory (GML) ObsPack GLOBALView+ products <https://gml.noaa.gov/ccgg/obspack/index.html>. Includes specialized routines for filtering trace gas time-series data based on meteorological and quality control parameters. Additionally, streamlines the generation of configuration files for the Hybrid Single-Particle Lagrangian Integrated Trajectory (HYSPLIT) model <https://www.ready.noaa.gov/HYSPLIT.php>, supporting high-throughput parallel processing of trajectory simulations.

Authors:Sergio Ibarra-Espinosa [aut, cre], Lei Hu [ctb]

rtorf_4.3.2.tar.gz
rtorf_4.3.2.zip(r-4.7)rtorf_4.3.2.zip(r-4.6)rtorf_4.3.2.zip(r-4.5)
rtorf_4.3.2.tgz(r-4.6-x86_64)rtorf_4.3.2.tgz(r-4.6-arm64)rtorf_4.3.2.tgz(r-4.5-x86_64)rtorf_4.3.2.tgz(r-4.5-arm64)
rtorf_4.3.2.tar.gz(r-4.7-arm64)rtorf_4.3.2.tar.gz(r-4.7-x86_64)rtorf_4.3.2.tar.gz(r-4.6-arm64)rtorf_4.3.2.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rtorf/json (API)

# Install 'rtorf' in R:
install.packages('rtorf', repos = c('https://atmoschem.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ibarraespinosa/rtorf/issues

Uses libs:
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

glibcopenmp

5.99 score 76 scripts 48 exports 7 dependencies

Last updated from:6fd2206842. Checks:11 NOTE, 1 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE197
linux-devel-x86_64NOTE118
source / vignettesOK225
linux-release-arm64NOTE201
linux-release-x86_64NOTE138
macos-release-arm64NOTE130
macos-release-x86_64NOTE201
macos-oldrel-arm64NOTE101
macos-oldrel-x86_64NOTE230
windows-develNOTE151
windows-releaseNOTE114
windows-oldrelNOTE136
wasm-releaseFAIL121

Exports:fexget_ntobs_addltimeobs_addmtimeobs_addstimeobs_addtimeobs_addzeroobs_aggobs_convolveobs_find_receptorsobs_footobs_foot_flipobs_footnameobs_formatobs_freqobs_gridobs_grid_checkobs_grid_cubeobs_grid_kernelobs_grid_simpleobs_hysplit_ascdataobs_hysplit_controlobs_hysplit_control_readobs_hysplit_setupobs_id2posobs_indexobs_info2idobs_julianobs_list.dtobs_metaobs_ncobs_nc_getobs_normalize_dmassobs_outobs_plotobs_rbindobs_readobs_read_csvyobs_read_ncobs_read_nc_attobs_roundtimeobs_select_secobs_summaryobs_tableobs_traj_footobs_truncobs_write_csvysr

Dependencies:cpp11cptcitydata.tablegenericslubridatencdf4timechange

Particle
Rendered fromparticle_grid.Rmdusingknitr::rmarkdown

Last update: 2026-05-08
Started: 2026-05-08

aircore
Checks and definitions | Filters | Adding time as POSIXct class | Cut time | Aggregate data | Add local time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromaircore.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-26

aircraft-flask
Checks and definitions | Filters | Adding time as POSIXct class | Cut time | Aggregate data | Add local time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromaircraft-flask.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-22

aircraft-insitu
Checks and definitions | Filters | Adding time as POSIXct class | Cut time | Aggregate data | Add local time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromaircraft-insitu.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-20

shipboard-flask
Checks and definitions | Filters | Key Time | Hierarchy of solar or local time | Cut time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromshipboard-flask.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-26

shipboard-insitu
Checks and definitions | Plot
Rendered fromshipoboard-insitu.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-26

surface-flask
Checks and definitions | Filters | Key Time | Hierarchy of solar or local time | Cut time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromsurface-flask.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-26

surface-insitu
Checks and definitions | Filters | Key Time | Hierarchy of solar or local time | Cut time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromsurface-insitu.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-22

surface-pfp
Checks and definitions | Filters | Key Time | Hierarchy of solar or local time | Cut time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromsurface-pfp.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-26

tower-insitu
Checks and definitions | Filters | Key Time | Hierarchy of solar or local time | Cut time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromtower-insitu.Rmdusingknitr::rmarkdown

Last update: 2026-03-31
Started: 2024-08-26

aircraft-pfp
Checks and definitions | Filters | Adding time as POSIXct class | Cut time | Aggregate data | Add local time | Master | Save master | txt | csv | csvy | Receptors | Plot
Rendered fromaircraft-pfp.Rmdusingknitr::rmarkdown

Last update: 2025-04-01
Started: 2024-08-19

hysplit
Rendered fromhysplit.Rmdusingknitr::rmarkdown

Last update: 2025-03-12
Started: 2025-03-12

summary
ObsPack summary
Rendered fromsummary.Rmdusingknitr::rmarkdown

Last update: 2025-03-12
Started: 2024-08-19

Readme and manuals

Help Manual

Help pageTopics
File extensionfex
Check the max number of threadsget_nt
add local timeobs_addltime
Add matlab timeobs_addmtime
Add solar timeobs_addstime
Add timesobs_addtime
Aggregates Observations by timeobs_agg
obs_convolveobs_convolve
Compares expected receptorsobs_find_receptors
obs_footprintsobs_foot
obs_foot_flipobs_foot_flip
Expected footprint nameobs_footname
Formatting dataobs_format
return numeric vector in intervalsobs_freq
obs_gridobs_grid
Conservation check for gridded footprintsobs_grid_check
3D footprint gridding (lon, lat, time)obs_grid_cube
Gaussian kernel footprint griddingobs_grid_kernel
Bin-and-sum footprint griddingobs_grid_simple
obs_hysplit_ascdataobs_hysplit_ascdata
obs_hysplit_controlobs_hysplit_control
obs_hysplit_control_readobs_hysplit_control_read
obs_hysplit_setupobs_hysplit_setup
obs_id2posobs_id2pos
obs_info2idobs_info2id
obs_julianobs_julian
list.dtobs_list.dt
Read obspack metadataobs_meta
obs_ncobs_nc
obs_nc_getobs_nc_get
obs_normalize_dmassobs_normalize_dmass
outersectobs_out
Read obspack metadataobs_plot
rbind obspackobs_rbind
Read obspack (.txt)obs_read
reads CSVYobs_read_csvy
Read obspack (.nc)obs_read_nc
Read obspack attributes (.nc)obs_read_nc_att
round seconds from "POSIXct" "POSIXt" classesobs_roundtime
Select Observations by closest time (seconds)obs_select_sec
Summary of the ObsPack files (.txt)obs_index obs_summary
Obspack Table Summaryobs_table
obs_traj_footobs_traj_foot
Trunc numbers with a desired number of decimalsobs_trunc
Generates YAML and write data.frameobs_write_csvy
Extacts n last characterssr